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RESEARCH

A Tale of Two Cities: elFG41 and elF4G2's Unexpected Mechanisms in Translation Initiation

Meghna Pramoda, Harvard College '29 & Siona Pramoda, Stanford '30 & Sam Perli, Massachusetts Institute of Technology Ph.D. ’16

DOI:

THURJ Volume 16 | Issue 2

Abstract

This study dissects the roles of two isoforms of eIF4G, eIF4G1 and eIF4G2, by combining in vitro luciferase assays on 48 putative transcripts with computational analysis. Unexpectedly, most putative eIF4G1- associated transcripts maintained or increased translation following eIF4G1 knockdown, suggesting that their translation can persist through alternative initiation routes when eIF4G1 levels are reduced. Similarly, a majority of putative eIF4G2-associated transcripts retained or increased translation following eIF4G2 knockdown, while a smaller subset exhibited reduced translation consistent with stronger eIF4G2 dependence. Notably, the addition of recombinant Nat1—the murine ortholog of human eIF4G2 (also known as DAP5/p97), a protein implicated in non-canonical translation initiation—partially altered translation output in a subset of eIF4G2-associated conditions, though no statistically significant global rescue relative to eIF4G2 knockdown was observed. Comprehensive motif discovery revealed a highly conserved GC-rich 16-nucleotide sequence whose composition is consistent with RNA G-quadruplex- forming sequences. Together, these results suggest that eIF4G isoforms act as context-dependent regulators of translational plasticity, with potential implications for stem cell biology and translational dysregulation in disease.

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